Consensus resources for International Human Epigenome Consortium

This page is meant to be a mirror of GRCh38 resources published by EBI

Additionally, other resources on which consensus within IHEC is achieved will be located here for reference to ensure that all data is processed using the same annotations.

GRCh38 reference build

The GRCh38 reference build chosen by IHEC is available at:
http://www.epigenomes.ca/data/CEMT/resources/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz
http://www.epigenomes.ca/data/CEMT/resources/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz,md5sum

and via EBI at:
http://ftp.ebi.ac.uk/pub/databases/blueprint/reference/20150407_reference_files/GRCh38_no_alt_analysis_set.201503031.fa.gz

The NCBI url is:
ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_genbank/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh38/seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz

Gene annotations

The v29 gene annotations are available at:
http://www.epigenomes.ca/data/CEMT/resources/gencode.v22.annotation.201503031.gtf.gz
http://www.epigenomes.ca/data/CEMT/resources/gencode.v22.annotation.201503031.gtf.gz.md5sum
and
http://ftp.ebi.ac.uk/pub/databases/blueprint/reference/20150407_reference_files/gencode.v22.annotation.201503031.gtf.gz

The corresponding links to gencode v22 are:
https://www.gencodegenes.org/releases/22.html
ftp://ftp.sanger.ac.uk/pub/gencode/Gencode_human/release_22/gencode.v22.annotation.gtf.gz

For v24 resources refer to https://www.gencodegenes.org/releases/24.html

GRCh38 Blacklist

To be discussed