ChromHMM Report
Input Directory: /projects/mbilenky/CEMT/breast/forChromHMM/
Output Directory: /projects/production_genomics/CEMT/breast/finder/chromhmm_18_state_Misha_binned/
Number of States: 18
Assembly: hg19
Full ChromHMM command: LearnModel -b 200 -p 6 /projects/mbilenky/CEMT/breast/forChromHMM/ /projects/production_genomics/CEMT/breast/finder/chromhmm_18_state_Misha_binned/ 18 hg19
Model Parameters
Emission Parameter SVG File
Emission Parameter Tab-Delimited Text File
Transition Parameter SVG File
Transition Parameter Tab-Delimited Text File
All Model Parameters Tab-Delimited Text File
Genome Segmentation Files
CEMT_35_18 Segmentation File (Four Column Bed File)
CEMT_36_18 Segmentation File (Four Column Bed File)
CEMT_37_18 Segmentation File (Four Column Bed File)
CEMT_38_18 Segmentation File (Four Column Bed File)
Custom Tracks for loading into the UCSC Genome Browser:
CEMT_35_18 Browser Custom Track Dense File
CEMT_35_18 Browser Custom Track Expanded File
CEMT_36_18 Browser Custom Track Dense File
CEMT_36_18 Browser Custom Track Expanded File
CEMT_37_18 Browser Custom Track Dense File
CEMT_37_18 Browser Custom Track Expanded File
CEMT_38_18 Browser Custom Track Dense File
CEMT_38_18 Browser Custom Track Expanded File
State Enrichments
CEMT_35_18 Enrichments
CEMT_35_18 Overlap Enrichment SVG File
CEMT_35_18 Overlap Enrichment Tab-Delimited Text File
CEMT_35_18_RefSeqTES_neighborhood Enrichment SVG File
CEMT_35_18_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File
CEMT_35_18_RefSeqTSS_neighborhood Enrichment SVG File
CEMT_35_18_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File
CEMT_36_18 Enrichments
CEMT_36_18 Overlap Enrichment SVG File
CEMT_36_18 Overlap Enrichment Tab-Delimited Text File
CEMT_36_18_RefSeqTES_neighborhood Enrichment SVG File
CEMT_36_18_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File
CEMT_36_18_RefSeqTSS_neighborhood Enrichment SVG File
CEMT_36_18_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File
CEMT_37_18 Enrichments
CEMT_37_18 Overlap Enrichment SVG File
CEMT_37_18 Overlap Enrichment Tab-Delimited Text File
CEMT_37_18_RefSeqTES_neighborhood Enrichment SVG File
CEMT_37_18_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File
CEMT_37_18_RefSeqTSS_neighborhood Enrichment SVG File
CEMT_37_18_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File
CEMT_38_18 Enrichments
CEMT_38_18 Overlap Enrichment SVG File
CEMT_38_18 Overlap Enrichment Tab-Delimited Text File
CEMT_38_18_RefSeqTES_neighborhood Enrichment SVG File
CEMT_38_18_RefSeqTES_neighborhood Enrichment Tab-Delimited Text File
CEMT_38_18_RefSeqTSS_neighborhood Enrichment SVG File
CEMT_38_18_RefSeqTSS_neighborhood Enrichment Tab-Delimited Text File